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The impact of AlphaFold2 on experimental structure solution

Maximilian Edich, David C. Briggs, Oliver Kippes, Yunyun Gao, Andrea Thorn

2022Faraday Discussions25 citationsDOIOpen Access PDF

Abstract

protein design and the interpretation of Cryo-EM data with an atomic model. However, these methods are limited by their training data and are of limited use to predict conformational variability and fold flexibility; they also lack co-factors, post-translational modifications and multimeric complexes with oligonucleotides. They also are not always perfect in terms of chemical geometry. Nevertheless, machine learning-based fold prediction is a game changer for structural bioinformatics and experimentalists alike, with exciting developments ahead.

Topics & Concepts

Computer scienceFlexibility (engineering)Sequence (biology)Interpretation (philosophy)Protein structureTask (project management)OligonucleotideMachine learningArtificial intelligenceChemistryEngineeringSystems engineeringDNABiochemistryProgramming languageMathematicsStatisticsRNA and protein synthesis mechanismsEnzyme Structure and FunctionProtein Structure and Dynamics
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