YAMACS: a graphical interface for GROMACS
Arkadeep Sarkar, Jacopo Santoro, Luigi Di Biasi, Francesco Marrafino, Stefano Piotto
Abstract
SUMMARY: A graphical user interface for the GROMACS program has been developed as plugins for YASARA molecular graphics suite. The most significant GROMACS methods can be run entirely via a windowed menu system, and the results are shown on screen in real time. AVAILABILITY AND IMPLEMENTATION: YAMACS is written in Python and is freely available for download at https://github.com/YAMACS-SML/YAMACS and is supported on Linux. It has been released under GPL-3.0 license. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Topics & Concepts
Python (programming language)Computer scienceGraphical user interfacePlug-inMIT LicenseSuiteGraphicsOperating systemInterface (matter)DownloadSoftwareProgramming languageOS XComputer graphics (images)ArchaeologyMaximum bubble pressure methodBubbleHistoryMicrobial Metabolic Engineering and BioproductionProtein Structure and DynamicsRNA and protein synthesis mechanisms