MitoFlex: an efficient, high-performance toolkit for animal mitogenome assembly, annotation and visualization
Junyu Li, Weixuan Li, Antai Wang, Yu Zhang
Abstract
SUMMARY: MitoFlex is a linux-based mitochondrial genome analysis toolkit, which provides a complete workflow of raw data filtering, de novo assembly, mitochondrial genome identification and annotation for animal High Throughput Sequencing data. The overall performance was compared between MitoFlex and its analogue MitoZ, in terms of protein-coding gene recovery, memory consumption and processing speed. AVAILABILITYAND IMPLEMENTATION: MitoFlex is available at https://github.com/Prunoideae/MitoFlex under GPLv3 license. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Topics & Concepts
WorkflowComputer scienceAnnotationVisualizationSequence assemblyLicenseCoding (social sciences)Computational biologyGenomeThroughputData miningGeneDatabaseBiologyOperating systemGeneticsArtificial intelligenceTranscriptomeMathematicsStatisticsWirelessGene expressionMitochondrial Function and PathologyGenomics and Phylogenetic StudiesBiomedical Text Mining and Ontologies