Annotated Whole-Genome Multilocus Sequence Typing Schema for Scalable High-Resolution Typing of Streptococcus pyogenes
Ana Friães, Rafael Mamede, Mariana Ferreira, José Melo‐Cristino, Mário Ramirez
Abstract
89 and the clarification of the genetic relatedness among isolates recovered in outbreak contexts. The schema was thoroughly annotated and made publicly available on the chewie-NS online platform (https://chewbbaca.online/species/1/schemas/1), providing a framework for high-resolution typing and analyzing the genetic variability of loci of particular biological interest.
Topics & Concepts
Multilocus sequence typingTypingWhole genome sequencingBiologyStreptococcus pyogenesComputational biologyGeneticsGenomeGenotypeBacteriaGeneStaphylococcus aureusStreptococcal Infections and TreatmentsAntimicrobial Resistance in StaphylococcusPlant Pathogenic Bacteria Studies