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In Search of the Best Low-Cost Methods for Efficient Screening of Conformers

Haedam Mun, Wanutcha Lorpaiboon, Junming Ho

2024The Journal of Physical Chemistry A16 citationsDOIOpen Access PDF

Abstract

Locating the lowest energy conformer is crucial for the accurate computation of equilibrium properties of molecular systems. This paper examines the performance of efficient low-cost methods in terms of the alignment and relative energies of their energy minima against the benchmark revDSD-PBEP86-D4/def2-TZVPP//MP2/cc-pVTZ potential energy surface. The low-cost methods considered include GFN-FF, GFN2-xTB, DFTB3, HF-3c, B97-3c, PBEh-3c, and r 2 SCAN-3c composite methods against a diverse test set of 20 compounds including alkanes, perfluoroalkyl molecules, peptides, open-shell radicals, and Zn(II) complexes of varying sizes. The “3c” composite methods are generally more accurate, but are at least 2–3 orders of magnitude more expensive than tight-binding methods which have energy minima that align well with the benchmark potential energy surface. The findings of this paper were further exploited to introduce a simple strategy involving Grimme’s CENSO energy-sorting algorithm that resulted in up to an order of magnitude reduction in computational time for locating the lowest energy conformer on the revDSD-PBEP86-D4/def2-TZVPP//MP2/cc-pVTZ surface.

Topics & Concepts

Maxima and minimaBenchmark (surveying)Conformational isomerismComputationEnergy (signal processing)Potential energy surfaceSet (abstract data type)Statistical physicsSurface (topology)Computer scienceSortingComputational chemistryMoleculeChemical physicsChemistryBiological systemPhysicsAlgorithmMathematicsQuantum mechanicsBiologyGeometryMathematical analysisProgramming languageGeographyGeodesyAdvanced Chemical Physics StudiesFree Radicals and AntioxidantsMachine Learning in Materials Science
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