Litcius/Paper detail

Convergent genome evolution shaped the emergence of terrestrial animals

Jialin Wei, Davide Pisani, Philip C. J. Donoghue, Marta Álvarez‐Presas, Jordi Paps

2025Nature6 citationsDOIOpen Access PDF

Abstract

. These constitute a series of independent evolutionary experiments from which we can decipher the role of contingency versus convergence in the adaptation of animal genomes. Here we compare 154 genomes from 21 animal phyla and their outgroups to reconstruct the protein-coding content of the ancestral genomes linked to 11 animal terrestrialization events, and to produce a timescale of terrestrialization. We uncover distinct patterns of gene gain and loss underlying each transition to land, but similar biological functions emerged recurrently pointing to specific adaptations as key to life on land. We show that semi-terrestrial species evolved convergent functional patterns, in contrast with fully terrestrial lineages that followed different paths to land. Our timeline supports three temporal windows of land colonization by animals during the last 487 million years, each associated with specific ecological contexts. Although each lineage exhibits distinct adaptations, there is strong evidence of convergent genome evolution across the animal kingdom suggesting that, in large part, adaptation to life on land is predictable, linking genes to ecosystems.

Topics & Concepts

Convergent evolutionBiologyEvolutionary biologyLineage (genetic)Adaptation (eye)GenomePhylogeneticsPlant evolutionTree of life (biology)PhylumPhylogenetic treePhylogenomicsParallel evolutionBiological evolutionMolecular evolutionGenome evolutionOrganismVertebrateExperimental evolutionSyntenyExaptationComparative genomicsNatural selectionTimelineThree-domain systemEcologyGenomicsGeneAnimal speciesOrthologous GeneGenome sizeMammalCommon descentEvolution of mammalsGeneticsInvertebrateContingencyAmnioteGenomics and Phylogenetic StudiesEnvironmental DNA in Biodiversity StudiesEvolution and Paleontology Studies