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Acquisition of residency programs by T cells entering the human brain

Cheng‐Chih Hsiao, Hendrik J. Engelenburg, Jasper Rip, Annet F. Wierenga‐Wolf, Fabiënne van Puijfelik, Marvin M. van Luijn, Inge Huitinga, Jörg Hamann, Joost Smolders

2025Cell Reports16 citationsDOIOpen Access PDF

Abstract

T cell surveillance is mandatory for maintaining central nervous system (CNS) homeostasis, while aberrant accumulation is linked to neuroinflammation. To explore the residency programs acquired by T cells through different anatomical locations of the human brain, we isolated CD8 + and CD4 + T cells from CNS border compartments (choroid plexus and leptomeninges), intrathecal compartments (cerebrospinal fluid [CSF] and subcortical white matter [WM]), and paired peripheral blood of brain donors. Flow cytometry revealed a shared effector memory phenotype across CNS compartments that was partially induced in circulating T cells interacting with brain endothelium in vitro . Intrathecal T cells expressed full tissue-residency traits, yet T cells from WM, compared to CSF, showed reduced expression of migratory, co-stimulatory, and recent activation markers despite a similar cytokine response upon ex vivo activation. This work demonstrates the versatility of T cell phenotypes across CNS compartments and provides insight into the programs regulating their recruitment and maintenance within the CNS.

Topics & Concepts

Choroid plexusNeuroinflammationBiologyCentral nervous systemPhenotypeCell biologyCytotoxic T cellNeuroscienceMicrogliaFlow cytometryCD8T cellCerebrospinal fluidImmunologyEx vivoPathologyMedicineImmune systemIn vitroInflammationBiochemistryGeneNeuroinflammation and Neurodegeneration MechanismsSingle-cell and spatial transcriptomicsBarrier Structure and Function Studies