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Design, synthesis, and molecular dynamics simulation studies of quinoline derivatives as protease inhibitors against SARS-CoV-2

Vishal Singh, Himani Chaurasia, Priyanka Kumari, Anup Som, Richa Mishra, Ritika Srivastava, Farha Naaz, Anuradha Singh, Ramendra K. Singh

2021Journal of Biomolecular Structure and Dynamics42 citationsDOIOpen Access PDF

Abstract

might act as a potential inhibitor against the protease enzyme.Communicated by Ramaswamy H. SarmaHighlightsQuinoline derivatives have been designed as protease inhibitors against SARS-CoV-2.The compounds were docked at the allosteric site of SARS-CoV-2-Mpro enzyme (PDB ID: 6LU7) to study the stability of protein-ligand complex.Docking studies indicated the stable ligand-protein complexes for all designed compounds.The Toxicity Prediction by Komputer Assisted Technology protocol in DS v20.1.0.19295 software was used to evaluate the toxicity of the designed quinoline derivatives.Molecular dynamics studies indicated the formation of stable ligand-Mpro complexes.

Topics & Concepts

ChemistryProteaseHydrogen bondDocking (animal)StereochemistryActive siteAllosteric regulationProtein Data Bank (RCSB PDB)AutoDockMolecular dynamicsLipinski's rule of fiveQuinolineEnzymeCombinatorial chemistryIn silicoBiochemistryComputational chemistryOrganic chemistryMoleculeGeneNursingMedicineComputational Drug Discovery MethodsSynthesis and biological activitySARS-CoV-2 and COVID-19 Research
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