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Integrative Description of Cryptic Tigriopus Species From Korea Using MALDI-TOF MS and DNA Barcoding

Jisu Yeom, Nayeon Park, Raehyuk Jeong, Wonchoel Lee

2021Frontiers in Marine Science17 citationsDOIOpen Access PDF

Abstract

MALDI Time-of-Flight Mass Spectrometry (MALDI-TOF MS) provides a fast and reliable alternative method for species-level identification of pathogens and various metazoans. Compared to the commonly used mitochondrial cytochrome c oxidase subunit I (mtCOI) barcoding, advantages of MALDI-TOF MS are rapid species identifications and low costs. In this study, we used MALDI-TOF MS to determine whether spectra patterns of different species can be used for species identification. We obtained a total of 138 spectra from individual specimens of Tigriopus , which were subsequently used for various cluster analyses. Our findings revealed these spectra form three clear clusters with high AU value support. This study validates the viability of MALDI-TOF MS as a methodology for higher-resolution species identification, allowing detection of cryptic species of harpacticoida. In addition, we propose a new species, Tigriopus koreanus sp. nov. by utilizing integrative methods such as morphological comparison, mtCOI barcoding, and MALDI-TOF MS.

Topics & Concepts

DNA barcodingBiologySpecies complexSpecies identificationIdentification (biology)Mitochondrial DNAComputational biologyMass spectrometryEvolutionary biologyBotanyPhylogenetic treeChemistryChromatographyGeneticsGeneBacterial Identification and Susceptibility TestingYersinia bacterium, plague, ectoparasites researchIdentification and Quantification in Food