The Proteome of Large or Small Extracellular Vesicles in Pig Seminal Plasma Differs, Defining Sources and Biological Functions
Isabel Barranco, Christian M. Sánchez‐López, Diego Bucci, Alberto Álvarez, Heriberto Rodríguez‐Martínez, Antonio Marcilla, Jordi Roca
Abstract
•Two EV subsets (L/S) were isolated from pig seminal plasma by a SEC procedure.•A total of 1,034 proteins were identified by LC-MS/MS in seminal EVs.•Up to 737 proteins were quantified by SWATH in seminal EVs.•The two subsets of seminal EVs showed differences in proteomic profile.•Each EV subset would have different biogenesis and biological function. Seminal plasma contains many morphologically heterogeneous extracellular vesicles (sEVs). These are sequentially released by cells of the testis, epididymis, and accessory sex glands and involved in male and female reproductive processes. This study aimed to define in depth sEV subsets isolated by ultrafiltration and size exclusion chromatography, decode their proteomic profiles using liquid chromatography–tandem mass spectrometry, and quantify identified proteins using sequential window acquisition of all theoretical mass spectra. The sEV subsets were defined as large (L-EVs) or small (S-EVs) by their protein concentration, morphology, size distribution, and EV-specific protein markers and purity. Liquid chromatography–tandem mass spectrometry identified a total of 1034 proteins, 737 of them quantified by SWATH in S-EVs, L-EVs, and non-EVs-enriched samples (18–20 size exclusion chromatography–eluted fractions). The differential expression analysis revealed 197 differentially abundant proteins between both EV subsets, S-EVs and L-EVs, and 37 and 199 between S-EVs and L-EVs versus non-EVs-enriched samples, respectively. The gene ontology enrichment analysis of differentially abundant proteins suggested, based on the type of protein detected, that S-EVs could be mainly released through an apocrine blebbing pathway and be involved in modulating the immune environment of the female reproductive tract as well as during sperm–oocyte interaction. In contrast, L-EVs could be released by fusion of multivesicular bodies with the plasma membrane becoming involved in sperm physiological processes, such as capacitation and avoidance of oxidative stress. In conclusion, this study provides a procedure capable of isolating subsets of EVs from pig seminal plasma with a high degree of purity and shows differences in the proteomic profile between EV subsets, indicating different sources and biological functions for the sEVs. Seminal plasma contains many morphologically heterogeneous extracellular vesicles (sEVs). These are sequentially released by cells of the testis, epididymis, and accessory sex glands and involved in male and female reproductive processes. This study aimed to define in depth sEV subsets isolated by ultrafiltration and size exclusion chromatography, decode their proteomic profiles using liquid chromatography–tandem mass spectrometry, and quantify identified proteins using sequential window acquisition of all theoretical mass spectra. The sEV subsets were defined as large (L-EVs) or small (S-EVs) by their protein concentration, morphology, size distribution, and EV-specific protein markers and purity. Liquid chromatography–tandem mass spectrometry identified a total of 1034 proteins, 737 of them quantified by SWATH in S-EVs, L-EVs, and non-EVs-enriched samples (18–20 size exclusion chromatography–eluted fractions). The differential expression analysis revealed 197 differentially abundant proteins between both EV subsets, S-EVs and L-EVs, and 37 and 199 between S-EVs and L-EVs versus non-EVs-enriched samples, respectively. The gene ontology enrichment analysis of differentially abundant proteins suggested, based on the type of protein detected, that S-EVs could be mainly released through an apocrine blebbing pathway and be involved in modulating the immune environment of the female reproductive tract as well as during sperm–oocyte interaction. In contrast, L-EVs could be released by fusion of multivesicular bodies with the plasma membrane becoming involved in sperm physiological processes, such as capacitation and avoidance of oxidative stress. In conclusion, this study provides a procedure capable of isolating subsets of EVs from pig seminal plasma with a high degree of purity and shows differences in the proteomic profile between EV subsets, indicating different sources and biological functions for the sEVs. Mounting evidence shows that seminal plasma (SP), the heterogeneous fluid that surrounds sperm during/after ejaculation, plays a key role in many physiological reproductive processes, including sperm function and embryo development (1Rodriguez-Martinez H. Martinez E.A. Calvete J.J. Peña Vega F.J. Roca J. Seminal plasma: relevant for fertility?.Int. J. Mol. Sci. 2021; 22: 4368Crossref PubMed Scopus (36) Google Scholar). This fluid, mainly composed by secretions from the epididymis and accessory sex glands, contains a wide repertoire of biomolecules, as inorganic ions, hormones, lipids, nucleic acids, peptides, and proteins (1Rodriguez-Martinez H. Martinez E.A. Calvete J.J. Peña Vega F.J. Roca J. Seminal plasma: relevant for fertility?.Int. J. Mol. Sci. 2021; 22: 4368Crossref PubMed Scopus (36) Google Scholar). The last of these largely define SP function, as the modulation of sperm function, motility, capacitation, and encounter with the oocyte, as well as triggering immune responses by the female after mating or insemination, is crucial for healthy embryo development (2Rodriguez-Martinez H. Kvist U. Ernerudh J. Sanz L. Calvete J.J. Seminal plasma proteins: what role do they play?.Am. J. Reprod. Immunol. 2011; 66: 11-22Crossref PubMed Scopus (280) Google Scholar). Recent research reported that some of these SP proteins could be loaded into seminal extracellular vesicles (sEVs), where they might remain safe from the degradation by proteolytic enzymes in semen (3Lin Y. Liang A. He Y. Li Z. Li Z. Wang G. et al.Proteomic analysis of seminal extracellular vesicle proteins involved in asthenozoospermia by iTRAQ.Mol. Reprod. Dev. 2019; 86: 1094-1105Crossref PubMed Scopus (34) Google Scholar, 4Zhang X. Vos H.R. Tao W. Stoorvogel W. Proteomic profiling of two distinct populations of extracellular vesicles isolated from human seminal plasma.Int. J. Mol. Sci. 2020; 21: 7957Crossref PubMed Scopus (14) Google Scholar, 5Leahy T. Rickard J.P. Pini T. Gadella B.M. de Graaf S.P. Quantitative proteomic analysis of seminal plasma, sperm membrane proteins, and seminal extracellular vesicles suggests vesicular mechanisms aid in the removal and addition of proteins to the ram sperm membrane.Proteomics. 2020; 20e1900289Crossref PubMed Scopus (27) Google Scholar, 6Wang H. Zhu Y. Tang C. Zhou Z. Wang Z. Li Z. et al.Reassessment of the proteomic composition and function of extracellular vesicles in the seminal plasma.Endocrinology. Scopus Google Scholar). as a for in the EVs are defined as a heterogeneous of released by all and cells into the extracellular G. G. G. on the of extracellular Mol. PubMed Scopus Google Scholar). 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Sci. 2021; Scholar). on seminal EVs for of the total C. for and of extracellular of a by the and 2020; PubMed Scopus Google and research on a research that could be key of sperm including motility, capacitation, and and might G. are of from research to PubMed Scopus Google Scholar, and their in male reproductive PubMed Scopus Google Scholar, A. of male 2020; PubMed Scopus Google Scholar, L. Y. Wang Y. of in the of after the a 2020; 21: PubMed Scopus Google Scholar). In could be involved in the of sperm–oocyte L. A. vesicles of pig PubMed Scopus Google Scholar, U. H. seminal plasma on sperm function and protein by PubMed Scopus Google Scholar, J. J. Wang Y. C. W. H. et seminal plasma sperm function by into the sperm PubMed Scopus Google and in the and immune responses in the female for of and the development and of healthy Z. of gene expression by seminal in the PubMed Scopus Google Scholar). the mechanisms by could these remain to be proteins could be key In have the of sEV of their T. Rickard J.P. Pini T. Gadella B.M. de Graaf S.P. Quantitative proteomic analysis of seminal plasma, sperm membrane proteins, and seminal extracellular vesicles suggests vesicular mechanisms aid in the removal and addition of proteins to the ram sperm membrane.Proteomics. 2020; 20e1900289Crossref PubMed Scopus (27) Google Scholar, C. J. Zhou et analysis of from human seminal PubMed Scopus Google Scholar, Y. J. X. J. Y. C. et of extracellular vesicle in seminal plasma for in Reprod. 2020; PubMed Scopus Google Scholar, Z. Y. Zhou C. T. J. et of seminal plasma extracellular vesicle small in Sci. 2020; Scopus Google Scholar). In the proteomic profile of (3Lin Y. Liang A. He Y. Li Z. Li Z. Wang G. et al.Proteomic analysis of seminal extracellular vesicle proteins involved in asthenozoospermia by iTRAQ.Mol. Reprod. Dev. 2019; 86: 1094-1105Crossref PubMed Scopus (34) Google Scholar, 4Zhang X. Vos H.R. Tao W. Stoorvogel W. Proteomic profiling of two distinct populations of extracellular vesicles isolated from human seminal plasma.Int. J. Mol. Sci. 2020; 21: 7957Crossref PubMed Scopus (14) Google Scholar, 6Wang H. Zhu Y. Tang C. Zhou Z. Wang Z. Li Z. et al.Reassessment of the proteomic composition and function of extracellular vesicles in the seminal plasma.Endocrinology. Scopus Google Scholar, C. J. Zhou et analysis of from human seminal PubMed Scopus Google Scholar, L. composition and seminal plasma a of of male J. Mol. Sci. 2020; 21: PubMed Scopus Google differences in protein composition between EV subsets X. Vos H.R. Tao W. Stoorvogel W. Proteomic profiling of two distinct populations of extracellular vesicles isolated from human seminal plasma.Int. J. Mol. Sci. 2020; 21: 7957Crossref PubMed Scopus (14) Google Scholar, 6Wang H. Zhu Y. Tang C. Zhou Z. Wang Z. Li Z. et al.Reassessment of the proteomic composition and function of extracellular vesicles in the seminal plasma.Endocrinology. Scopus Google Scholar, et of distinct populations of that differentially and in Reprod. 86: Scopus Google and that sEV could be involved in a function. study the proteomic profile of sEV subsets in T. Rickard J.P. Pini T. Gadella B.M. de Graaf S.P. Quantitative proteomic analysis of seminal plasma, sperm membrane proteins, and seminal extracellular vesicles suggests vesicular mechanisms aid in the removal and addition of proteins to the ram sperm membrane.Proteomics. 2020; 20e1900289Crossref PubMed Scopus (27) Google Scholar). In a study in pig identified EV subsets to expression profile L. A. C. F.J. et vesicles isolated from seminal plasma different expression 2019; Scopus Google differences in their and biological function. 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In sEV proteins identified in the study were in EV for EV research is the of a procedure to different EV subsets in The study aimed to two subsets of using that as an and a of is to small from large where the small remain in the and the large are in the G. with an for extracellular PubMed Scopus Google Scholar, C. A. et profiles in of extracellular and PubMed Scopus Google Scholar, L. Wang A. et of to cells extracellular Sci. U. A. PubMed Scopus Google Scholar). The two isolated EV subsets were in using a of of C. for of extracellular vesicles a of the for extracellular vesicles and of the PubMed Scopus Google including morphology, and concentration, showed differences between EVs of the two subsets, some size between the two to be using G. A. G. and in by extracellular Mol. PubMed Scopus Google Scholar). analysis revealed that EVs from both subsets showed a of to EV-specific protein this showed that of the two sEV subsets in EVs distinct with proteins is a in aimed the protein composition of that the a on the of such S.P. J. Y. A. et of for the and of extracellular vesicles from protein and in human 2020; PubMed Scopus Google Scholar). In the the sEV subsets were isolated using a procedure and This procedure for EV from a wide of for extracellular in and J. PubMed Scopus Google including semen J. et from are for sperm 2011; PubMed Scopus Google for of large of EVs with a high degree of purity size exclusion for extracellular vesicle enrichment and proteomic analysis from relevant 2019; Scopus Google Scholar). The of a high abundant protein in pig SP C. Martinez E.A. H. et of the seminal plasma PubMed Scopus Google in the sEV samples would that the EV samples in the study have by proteins could be for the of EVs by proteomic Proteomic this of the differentially abundant proteins between and non-EVs-enriched samples, in the in non-EVs-enriched vesicles a of mainly proteins, are to cells to a et al.Reassessment of 2019; PubMed Scopus Google Scholar). In the of to the of EVs in to a of their in both physiological and C. Proteomic profiling in extracellular vesicles for and 2021; Scopus Google Scholar, of extracellular and PubMed Scopus Google Scholar). the proteomic profile of well in proteins (3Lin Y. Liang A. He Y. Li Z. Li Z. Wang G. et al.Proteomic analysis of seminal extracellular vesicle proteins involved in asthenozoospermia by iTRAQ.Mol. Reprod. Dev. 2019; 86: 1094-1105Crossref PubMed Scopus (34) Google Scholar, 4Zhang X. Vos H.R. Tao W. Stoorvogel W. Proteomic profiling of two distinct populations of extracellular vesicles isolated from human seminal plasma.Int. J. Mol. Sci. 2020; 21: 7957Crossref PubMed Scopus (14) Google Scholar, 6Wang H. Zhu Y. Tang C. Zhou Z. Wang Z. Li Z. et al.Reassessment of the proteomic composition and function of extracellular vesicles in the seminal plasma.Endocrinology. Scopus Google Scholar, C. J. Zhou et analysis of from human seminal PubMed Scopus Google Scholar, A. de H. J. from and a differential protein expression PubMed Scopus Google proteomic analysis of in is in et T. Rickard J.P. Pini T. Gadella B.M. de Graaf S.P. Quantitative proteomic analysis of seminal plasma, sperm membrane proteins, and seminal extracellular vesicles suggests vesicular mechanisms aid in the removal and addition of proteins to the ram sperm membrane.Proteomics. 2020; 20e1900289Crossref PubMed Scopus (27) Google and et T. proteomic profiling of extracellular vesicles in the proteins to sequential sperm with differences between and 2020; PubMed Scopus Google an proteomic analysis of a total of and proteins, in and respectively. the of this is the proteomic analysis of pig sEVs. a study in sEV proteins using mass spectrometry U. H. seminal plasma on sperm function and protein by PubMed Scopus Google Scholar). In the a total of proteins were identified and 737 of them were quantified by of LC-MS/MS and respectively. analysis of the proteins identified in both is the of would for a and of the EV of the of pig sEV with the for EVs from of and in and to proteins in pig that have reported in of these EV proteins, such as the and C. Martinez E.A. H. et of the seminal plasma PubMed Scopus Google Scholar, X. Rickard J.P. G. de Graaf S.P. Seminal plasma proteins as markers of sperm 2019; PubMed Scopus Google or the protein A. A. et of with proteomic and quantified in seminal PubMed Scopus Google Scholar, H. Y. of the and in J. Mol. Sci. 2020; 21: PubMed Scopus Google are involved in sperm function. evidence the that SP proteins are to both sperm function and the female immune (2Rodriguez-Martinez H. Kvist U. Ernerudh J. Sanz L. Calvete J.J. Seminal plasma proteins: what role do they play?.Am. J. Reprod. Immunol. 2011; 66: 11-22Crossref PubMed Scopus (280) Google Scholar). is as to these modulating SP proteins in the SP or are in where they might remain safe from SP on this have the of two subsets of as well as the from SP the of study the using a or depth of Wang et H. Zhu Y. Tang C. Zhou Z. Wang Z. Li Z. et al.Reassessment of the proteomic composition and function of extracellular vesicles in the seminal plasma.Endocrinology. Scopus Google the of human SP from with EVs and The as extracellular The of of the two subsets of with that of non-EVs-enriched quantified proteins were in all This could be by (1Rodriguez-Martinez H. Martinez E.A. Calvete J.J. Peña Vega F.J. Roca J. Seminal plasma: relevant for fertility?.Int. J. Mol. Sci. 2021; 22: 4368Crossref PubMed Scopus (36) Google proteins and proteins that were by the cells (2Rodriguez-Martinez H. Kvist U. Ernerudh J. Sanz L. Calvete J.J. Seminal plasma proteins: what role do they play?.Am. J. Reprod. Immunol. 2011; 66: 11-22Crossref PubMed Scopus (280) Google the between this from the of a to differentially abundant proteins differences were for proteins between The of L-EVs in proteins mainly is these to small including and in their membrane L. into the function of in the of PubMed Scopus Google Scholar). These proteins are involved in EV biogenesis and to PubMed Scopus Google Scholar, The biogenesis and PubMed Scopus (36) Google Scholar, 2019; PubMed Scopus Google Scholar). proteins in L-EVs were an for of protein involved in the multivesicular pathway of during and 2011; PubMed Scopus Google and and two proteins involved in vesicular and membrane fusion C. fusion by and plasma membrane PubMed Scopus (27) Google Scholar, A. T. of to from the plasma membrane and to PubMed Google Scholar). The in L-EVs of small and proteins, could that L-EVs were mainly by the mechanisms of by fusion of multivesicular bodies to the plasma membrane or by from the plasma membrane A. on biogenesis and Mol. Sci. PubMed Scopus Google by the apocrine the for seminal EV for S-EVs J.