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PARP inhibition impedes the maturation of nascent DNA strands during DNA replication

Alina Vaitsiankova, Kamila Burdová, Margarita Sobol, Amit Gautam, Oldřích Benada, Hana Hanzlíková, Keith W. Caldecott

2022Nature Structural & Molecular Biology167 citationsDOIOpen Access PDF

Abstract

Abstract Poly(ADP-ribose) polymerase 1 (PARP1) is implicated in the detection and processing of unligated Okazaki fragments and other DNA replication intermediates, highlighting such structures as potential sources of genome breakage induced by PARP inhibition. Here, we show that PARP1 activity is greatly elevated in chicken and human S phase cells in which FEN1 nuclease is genetically deleted and is highest behind DNA replication forks. PARP inhibitor reduces the integrity of nascent DNA strands in both wild-type chicken and human cells during DNA replication, and does so in FEN1 − / − cells to an even greater extent that can be detected as postreplicative single-strand nicks or gaps. Collectively, these data show that PARP inhibitors impede the maturation of nascent DNA strands during DNA replication, and implicate unligated Okazaki fragments and other nascent strand discontinuities in the cytotoxicity of these compounds.

Topics & Concepts

Okazaki fragmentsDNA replicationBiologyPoly ADP ribose polymeraseDNAReplication protein AMolecular biologyCell biologyControl of chromosome duplicationEukaryotic DNA replicationDNA repairDNA clampProliferating cell nuclear antigenPolymeraseDNA polymeraseDNA polymerase deltaGeneticsDNA-binding proteinRNAGeneReverse transcriptaseTranscription factorPARP inhibition in cancer therapyDNA Repair MechanismsCRISPR and Genetic Engineering