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The hidden role of heterotrophic bacteria in early carbonate diagenesis

Mónica Sánchez‐Román, Viswasanthi Chandra, Sebastian Mulder, Camila Areias, John J. G. Reijmer, Volker Vahrenkamp

2025Scientific Reports14 citationsDOIOpen Access PDF

Abstract

Abstract Microbial impacts on early carbonate diagenesis, particularly the formation of Mg-carbonates at low temperatures, have long eluded scientists. Our breakthrough laboratory experiments with two species of halophilic aerobic bacteria and marine carbonate grains reveal that these bacteria created a distinctive protodolomite (disordered dolomite) rim around the grains. Scanning Electron Microscopy (SEM) and X-ray Diffraction (XRD) confirmed the protodolomite formation, while solid-state nuclear magnetic resonance (NMR) revealed bacterial interactions with carboxylated organic matter, such as extracellular polymeric substances (EPS). We observed a significant carbon isotope fractionation (average δ 13 C = 11.3‰) and notable changes in Mg/Ca ratios throughout the experiments. Initial medium δ 13 C was − 18‰, sterile sediments were at 2‰ (n = 12), bacterial-altered sediments were − 6.8‰ (n = 12), and final medium δ 13 C was − 4.7‰. These results highlight the role of bacteria in driving organic carbon sequestration into Mg-rich carbonates and demonstrate the utility of NMR as a tool for detecting microbial biosignatures. This has significant implications for understanding carbonate diagenesis (dissolution and reprecipitation), climate science, and extraterrestrial research.

Topics & Concepts

DiagenesisCarbonateDissolutionDolomiteOrganic matterEnvironmental chemistryHeterotrophExtracellular polymeric substanceChemistryBacteriaGeologyDissolved organic carbonMineralogyGeochemistryPaleontologyOrganic chemistryBiofilmPaleontology and Stratigraphy of FossilsMethane Hydrates and Related PhenomenaGeology and Paleoclimatology Research