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Molecular features driving condensate formation and gene expression by the BRD4-NUT fusion oncoprotein are overlapping but distinct

Martyna Kosno, Simon L. Currie, Ashwani Kumar, Chao Xing, Michael K. Rosen

2023Scientific Reports15 citationsDOIOpen Access PDF

Abstract

Aberrant formation of biomolecular condensates has been proposed to play a role in several cancers. The oncogenic fusion protein BRD4-NUT forms condensates and drives changes in gene expression in Nut Carcinoma. Here we sought to understand the molecular elements of BRD4-NUT and its associated histone acetyltransferase (HAT), p300, that promote these activities. We determined that a minimal fragment of NUT (MIN) in fusion with BRD4 is necessary and sufficient to bind p300 and form condensates. Furthermore, a BRD4-p300 fusion protein also forms condensates and drives gene expression similarly to BRD4-NUT(MIN), suggesting the p300 fusion may mimic certain features of BRD4-NUT. The intrinsically disordered regions, transcription factor-binding domains, and HAT activity of p300 all collectively contribute to condensate formation by BRD4-p300, suggesting that these elements might contribute to condensate formation by BRD4-NUT. Conversely, only the HAT activity of BRD4-p300 appears necessary to mimic the transcriptional profile of cells expressing BRD4-NUT. Our results suggest a model for condensate formation by the BRD4-NUT:p300 complex involving a combination of positive feedback and phase separation, and show that multiple overlapping, yet distinct, regions of p300 contribute to condensate formation and transcriptional regulation.

Topics & Concepts

BRD4NutFusionGene expressionFusion geneGeneComputational biologyCell biologyRegulation of gene expressionFusion proteinBiologyExpression (computer science)BromodomainGeneticsChemistryComputer scienceHistonePhysicsRecombinant DNAProgramming languagePhilosophyLinguisticsAcousticsProtein Degradation and InhibitorsGenomics and Chromatin DynamicsChromatin Remodeling and Cancer