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INTERFACES. A program for determining the 3D structures of surfaces sites using NMR data

James Cunningham, Frédéric A. Perras

2022Journal of Magnetic Resonance Open16 citationsDOIOpen Access PDF

Abstract

Dynamic nuclear polarization surface enhanced NMR spectroscopy has enabled the determination of high-resolution structures from surface-supported molecules, including single-site heterogeneous catalysts. Structure determinations have largely mimicked the approaches used in biomolecular NMR spectroscopy, namely, using distance measurements to constrain a conformational search. These early demonstrations made use of purpose-built software, which has limited the adoption of the technique. Herein, we describe the open-source program INTERFACES (Interpret NMR to Elucidate or Reconstruct the Full Atomistic Configurations of External Surfaces) which automates the analysis of RE(SP)DOR data as well as the structure determination for surface sites. Distances, angles, dihedral angles, complex orientation, and distance from the support can all be sampled to find all structures that agree with the experimental data. A χ2 metric is used to define the error ranges of the REDOR fits and produce structures with an arbitrary level of confidence. Structural solutions are then provided as both overlays and ORTEP-like probability ellipsoids.

Topics & Concepts

Dihedral angleOverlayNuclear magnetic resonance spectroscopySoftwareEllipsoidOrientation (vector space)Surface (topology)Computer scienceSpectroscopyMaterials scienceComputational physicsMoleculeCrystallographyChemistryPhysicsGeometryNuclear magnetic resonanceMathematicsQuantum mechanicsOrganic chemistryProgramming languageHydrogen bondAstronomyAdvanced NMR Techniques and ApplicationsNMR spectroscopy and applicationsAdvanced MRI Techniques and Applications