Inferring spatial single-cell-level interactions through interpreting cell state and niche correlations learned by self-supervised graph transformer
Xiao Xiao, Le Yuan Zhang, Hongyu Zhao, Zuoheng Wang
Topics & Concepts
Spatial contextual awarenessComputer scienceTransformerCluster analysisGraphSpatial analysisCommunication sourceTranscriptomeSpatial correlationSpatial ecologyEncoding (memory)Gene regulatory networkArtificial intelligencePower graph analysisData miningSpatial relationClustering coefficientCorrelationNichePattern recognition (psychology)Computational biologyBiologyInteraction networkGene expression profilingContext (archaeology)Single-cell and spatial transcriptomicsCell Image Analysis TechniquesPluripotent Stem Cells Research