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Loss-of-function mutations are main drivers of adaptations during short-term evolution

Joanna Klim, Urszula Zielenkiewicz, Szymon Kaczanowski

2024Scientific Reports11 citationsDOIOpen Access PDF

Abstract

We noticed that during short-term experimental evolution and carcinogenesis, mutations causing gene inactivation (i.e., nonsense mutations or frameshifts) are frequent. Our meta-analysis of 65 experiments using modified dN/dS statistics indicated that nonsense mutations are adaptive in different experimental conditions and we empirically confirmed this prediction. Using yeast S. cerevisiae as a model we show that fixed or highly frequent gene loss-of-function mutations are almost exclusively adaptive in the majority of experiments.

Topics & Concepts

NonsenseNonsense mutationLoss functionGeneticsMutationBiologyGeneFunction (biology)Term (time)CarcinogenesisNonsense-mediated decayComputational biologyPhenotypeMissense mutationRNAPhysicsQuantum mechanicsRNA splicingEvolution and Genetic DynamicsCRISPR and Genetic EngineeringBioinformatics and Genomic Networks
Loss-of-function mutations are main drivers of adaptations during short-term evolution | Litcius