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Regulation of species metabolism in synthetic community systems by environmental pH oscillations

Shubin Li, Yingming Zhao, Shuqi Wu, Xiangxiang Zhang, Boyu Yang, Liangfei Tian, Xiaojun Han

2023Nature Communications20 citationsDOIOpen Access PDF

Abstract

Abstract Constructing a synthetic community system helps scientist understand the complex interactions among species in a community and its environment. Herein, a two-species community is constructed with species A (artificial cells encapsulating pH-responsive molecules and sucrose) and species B ( Saccharomyces cerevisiae ), which causes the environment to exhibit pH oscillation behaviour due to the generation and dissipation of CO 2 . In addition, a three-species community is constructed with species A′ (artificial cells containing sucrose and G6P), species B, and species C (artificial cells containing NAD + and G6PDH). The solution pH oscillation regulates the periodical release of G6P from species A′; G6P then enters species C to promote the metabolic reaction that converts NAD + to NADH. The location of species A′ and B determines the metabolism behaviour in species C in the spatially coded three-species communities with CA′B, CBA′, and A′CB patterns. The proposed synthetic community system provides a foundation to construct a more complicated microecosystem.

Topics & Concepts

NAD+ kinaseSaccharomyces cerevisiaeSynthetic biologyMetabolismBiochemistryEnzymeBiologyChemistryEcologyComputational biologyGenePhotoreceptor and optogenetics researchLipid Membrane Structure and BehaviorSupramolecular Self-Assembly in Materials
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