Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org
Jiří Černý, Paulína Božíková, Michal Malý, Michal Tykač, Lada Biedermannová, Bohdan Schneider
Abstract
A detailed description of the dnatco.datmos.org web server implementing the universal structural alphabet of nucleic acids is presented. It is capable of processing any mmCIF- or PDB-formatted files containing DNA or RNA molecules; these can either be uploaded by the user or supplied as the wwPDB or PDB-REDO structural database access code. The web server performs an assignment of the nucleic acid conformations and presents the results for the intuitive annotation, validation, modeling and refinement of nucleic acids.
Topics & Concepts
Nucleic acidProtein Data Bank (RCSB PDB)Computer scienceUploadNucleic acid structureRNADNAAlphabetWeb serverComputational biologyChemistryBiochemistryWorld Wide WebBiologyThe InternetLinguisticsPhilosophyGeneRNA and protein synthesis mechanismsDNA and Nucleic Acid ChemistryEnzyme Structure and Function