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Effective Inclusion of Electronic Polarization Improves the Description of Electrostatic Interactions: The prosECCo75 Biomolecular Force Field

Ricky Nencini, Carmelo Tempra, Denys Biriukov, Miguel Fernández, Víctor Cruces Chamorro, Jakub Polák, Philip E. Mason, Daniel Ondo, Jan Heyda, O. H. Samuli Ollila, Pavel Jungwirth, Matti Javanainen, Hector Martinez‐Seara

2024Journal of Chemical Theory and Computation37 citationsDOIOpen Access PDF

Abstract

prosECCo75 is an optimized force field effectively incorporating electronic polarization via charge scaling. It aims to enhance the accuracy of nominally nonpolarizable molecular dynamics simulations for interactions in biologically relevant systems involving water, ions, proteins, lipids, and saccharides. Recognizing the inherent limitations of nonpolarizable force fields in precisely modeling electrostatic interactions essential for various biological processes, we mitigate these shortcomings by accounting for electronic polarizability in a physically rigorous mean-field way that does not add to computational costs. With this scaling of (both integer and partial) charges within the CHARMM36 framework, prosECCo75 addresses overbinding artifacts. This improves agreement with experimental ion binding data across a broad spectrum of systems─lipid membranes, proteins (including peptides and amino acids), and saccharides─without compromising their biomolecular structures. prosECCo75 thus emerges as a computationally efficient tool providing enhanced accuracy and broader applicability in simulating the complex interplay of interactions between ions and biomolecules, pivotal for improving our understanding of many biological processes.

Topics & Concepts

BiomoleculePolarizabilityForce field (fiction)Molecular dynamicsWater modelScalingChemical physicsFormalism (music)ChemistryElectrostaticsIonNanotechnologyComputer scienceComputational chemistryMaterials scienceMoleculePhysical chemistryMusicalArtArtificial intelligenceVisual artsGeometryOrganic chemistryMathematicsProtein Structure and DynamicsMolecular Junctions and NanostructuresMass Spectrometry Techniques and Applications
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