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Patterning of Oncogenic Ras Clustering in Live Cells Using Vertically Aligned Nanostructure Arrays

Huanwen Mu, Yongpeng Zeng, Yinyin Zhuang, Weibo Gao, Yong Zhou, Krishnaraj Rajalingam, Wenting Zhao

2022Nano Letters17 citationsDOIOpen Access PDF

Abstract

As a dominant oncogenic protein, Ras is well-known to segregate into clusters on the plasma membrane for activating downstream signaling. However, current technologies for direct measurements of Ras clustering are limited to sophisticated high-resolution techniques like electron microscopy and fluorescence lifetime imaging. To further promote fundamental investigations and the related drug development, we hereby introduce a nanobar-based platform which effectively guides Ras clusters into quantifiable patterns in live cells that is resolvable under conventional microscopy. Major Ras isoforms, K-Ras, H-Ras, and N-Ras, were differentiated, as well as their highly prevalent oncogenic mutants G12V and G13D. Moreover, the isoform specificity and the sensitivity of a Ras inhibitor were successfully characterized on nanobars. We envision that this nanobar-based platform will serve as an effective tool to read Ras clustering on the plasma membrane, enabling a novel avenue both to decipher Ras regulations and to facilitate anti-Ras drug development.

Topics & Concepts

Gene isoformNanostructureMutantNanotechnologyCell biologyFluorescence microscopeCluster analysisDECIPHERHigh resolutionDrug developmentBiologyChemistryMaterials scienceBiophysicsFluorescenceBiochemistryDrugPhysicsComputer scienceBioinformaticsGeneRemote sensingMachine learningPharmacologyGeologyQuantum mechanicsProtein Kinase Regulation and GTPase SignalingCell death mechanisms and regulationCellular Mechanics and Interactions