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The Shuttling Cascade in Lasso Peptide Benenodin‐1 is Controlled by Non‐Covalent Interactions

Hendrik V. Schröder, Michael Stadlmeier, Martin Wühr, A. James Link

2021Chemistry - A European Journal13 citationsDOIOpen Access PDF

Abstract

The lasso peptide benenodin-1, a naturally occurring and bacterially produced [1]rotaxane, undergoes a reversible zip tie-like motion under heat activation, in which a peptidic wheel stepwise translates along a molecular thread in a cascade of "tail/loop pulling" equilibria. Conformational and structural analyses of four translational isomers, in solution and in the gas phase, reveal that the equilibrium distribution is controlled by mechanical and non-covalent forces within the lasso peptide. Furthermore, each dynamic pulling step is accompanied by a major restructuring of the intramolecular hydrogen bonding network between wheel and thread, which affects the peptide's physico-chemical properties.

Topics & Concepts

CascadeLasso (programming language)PeptideCovalent bondChemistryComputer scienceBiochemistryChromatographyOrganic chemistryWorld Wide WebMass Spectrometry Techniques and ApplicationsAdvanced Proteomics Techniques and ApplicationsAnalytical Chemistry and Chromatography