octoFLUshow: an Interactive Tool Describing Spatial and Temporal Trends in the Genetic Diversity of Influenza A Virus in U.S. Swine
Zebulun W. Arendsee, Jennifer Chang, David E. Hufnagel, Alexey Markin, Alicia Janas-Martindale, Amy L. Vincent, Tavis K. Anderson
Abstract
Influenza A virus (IAV) is passively surveilled in swine in the United States through a U.S. Department of Agriculture administered surveillance system. We present an interactive Web tool to visualize and explore trends in the genetic and geographic diversity of IAV derived from the surveillance system.
Topics & Concepts
Genetic diversityVirusInfluenza A virusBiologyDiversity (politics)VirologyAgriculturePandemicEvolutionary biologyGeographyGenetic variationGeographic information systemInfluenza A virus subtype H5N1PopulationHuman genetic variationGenetic variantsGenomeComputational biologyGenetic dataOrthomyxoviridaeGeneticsCoronavirus disease 2019 (COVID-19)Genetic variabilityAvian influenza virusInfluenza Virus Research StudiesAnimal Disease Management and EpidemiologyData-Driven Disease Surveillance