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Roles of adenine methylation in the physiology of Lacticaseibacillus paracasei

Jie Zhao, Meng Zhang, Wenyan Hui, Yue Zhang, Jing Wang, Shaojing Wang, Lai‐Yu Kwok, Jian Kong, Heping Zhang, Wenyi Zhang

2023Nature Communications19 citationsDOIOpen Access PDF

Abstract

Lacticaseibacillus paracasei is an economically important bacterial species, used in the food industry and as a probiotic. Here, we investigate the roles of N6-methyladenine (6mA) modification in L. paracasei using multi-omics and high-throughput chromosome conformation capture (Hi-C) analyses. The distribution of 6mA-modified sites varies across the genomes of 28 strains, and appears to be enriched near genes involved in carbohydrate metabolism. A pglX mutant, defective in 6mA modification, shows transcriptomic alterations but only modest changes in growth and genomic spatial organization.

Topics & Concepts

TranscriptomeBiologyGenomeEpigeneticsDNA methylationMethylationComputational biologyOmicsMutantGeneGeneticsGene expressionBacteriophages and microbial interactionsGenomics and Phylogenetic StudiesPolyamine Metabolism and Applications
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