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Assessment of the Clinical Utility of Plasma Metagenomic Next-Generation Sequencing in a Pediatric Hospital Population

Rose Lee, Fatima Al Dhaheri, Nira R. Pollock, Tanvi Sharma

2020Journal of Clinical Microbiology97 citationsDOIOpen Access PDF

Abstract

= 0.056). No patients with culture-negative endocarditis had organisms identified by mNGS. There were no significant differences in antimicrobial duration retest between tests with clinically relevant organism(s) and those that returned negative, nor were the MPMs different between pretreated and untreated organisms, suggesting that 10 days of antimicrobial therapy as observed in this cohort did not sterilize testing; however, no pretreated organisms identified resulted in a new diagnosis impacting clinical management. Plasma mNGS demonstrated higher utility for immunocompromised patients, but given the detection of many clinically irrelevant organisms (45%), cautious interpretation and infectious diseases consultation are prudent.

Topics & Concepts

MetagenomicsMedicineDNA sequencingAntimicrobialIntensive care medicineComputational biologyBioinformaticsInternal medicineBiologyMicrobiologyDNAGeneticsGeneCancer Genomics and DiagnosticsPancreatic and Hepatic Oncology ResearchBlood groups and transfusion
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