Investigating the Genetic Diversity of H5 Avian Influenza Viruses in the United Kingdom from 2020–2022
Alexander M. P. Byrne, Joe James, Benjamin C. Mollett, Stephanie Meyer, Tom Lewis, Magdalena Czepiel, Amanda H. Seekings, Sahar Mahmood, Saumya S. Thomas, Craig S. Ross, Dominic J. F. Byrne, Michael McMenamy, Valerie Bailie, Ken Lemon, Rowena Hansen, Marco Falchieri, Nicola S. Lewis, Scott M. Reid, Ian H. Brown, Ashley C. Banyard
Abstract
High-pathogenicity avian influenza virus (HPAIV) outbreaks devastate avian species across all sectors, having both economic and ecological impacts through mortalities in poultry and wild birds, respectively. These viruses can also represent a significant zoonotic risk. Since 2020, the United Kingdom has experienced two successive outbreaks of H5 HPAIV. While H5N8 HPAIV was predominant during the 2020-2021 outbreak, other H5 subtypes were also detected. The following year, there was a shift in the subtype dominance to H5N1 HPAIV, but multiple H5N1 genotypes were detected. Through the thorough utilization of whole-genome sequencing, it was possible to track and characterize the genetic evolution of these H5 HPAIVs in United Kingdom poultry and wild birds. This enabled us to assess the risk posed by these viruses at the poultry-wild bird and the avian-human interfaces and to investigate the potential lateral spread between infected premises, a key factor in understanding the threat to the commercial sector.