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Lipid Dynamics in Membranes Slowed Down by Transmembrane Proteins

Lisa Ebersberger, Torben Schindler, Sonja A. Kirsch, Kristýna Pluháčková, Alexandra Schambony, Tilo Seydel, Rainer A. Böckmann, Tobias Unruh

2020Frontiers in Cell and Developmental Biology29 citationsDOIOpen Access PDF

Abstract

-glycero-3-phosphocholine (DMPC) large unilamellar vesicles (LUVs) on a nanosecond time scale, high-resolution QENS experiments and complementary MD simulations have been utilized. By using different scattering contrasts in the experiment (chain-deuterated lipids and protonated lipids, respectively), a model could be developed which allows to examine the lipid and peptide dynamics separately. The experimental results revealed a restricted lipid lateral mobility in the presence of the TFRC transmembrane peptides. Also the apparent self-diffusion coefficient of the lateral movement of the peptide molecules could be determined quantitatively for the probed short-time regime. The findings could be confirmed very precisely by MD simulations. Furthermore, the article presents an estimation for the radius of influence of the peptides on the lipid long-range dynamics which could be determined by consistently combining results from experiment and simulation.

Topics & Concepts

Molecular dynamicsChemistryNanosecondBiophysicsTransmembrane proteinProtein dynamicsMembraneTransmembrane domainLipid bilayerBiological membraneChemical physicsMembrane proteinDiffusionVesicleLipid microdomainPhysicsBiochemistryReceptorBiologyComputational chemistryOpticsThermodynamicsLaserLipid Membrane Structure and BehaviorSpectroscopy and Quantum Chemical StudiesProtein Structure and Dynamics