Fine-Needle Aspiration-Based Patient-Derived Cancer Organoids
Anna E. Vilgelm, Kensey Bergdorf, Melissa M. Wolf, Vijaya Bharti, Rebecca L. Shattuck-Brandt, Ashlyn Blevins, Caroline Y. Jones, Courtney J. Phifer, Mason Lee, Cindy Lowe, Rachel A. Hongo, Kelli L. Boyd, James L. Netterville, Sarah L. Rohde, Kamran Idrees, Joshua A. Bauer, David Westover, Bradley I. Reinfeld, Naira Baregamian, Ann Richmond, W. Kimryn Rathmell, Ethan Lee, Oliver G. McDonald, Vivian Weiß
Abstract
Patient-derived cancer organoids hold great potential to accurately model and predict therapeutic responses. Efficient organoid isolation methods that minimize post-collection manipulation of tissues would improve adaptability, accuracy, and applicability to both experimental and real-time clinical settings. Here we present a simple and minimally invasive fine-needle aspiration (FNA)-based organoid culture technique using a variety of tumor types including gastrointestinal, thyroid, melanoma, and kidney. This method isolates organoids directly from patients at the bedside or from resected tissues, requiring minimal tissue processing while preserving the histologic growth patterns and infiltrating immune cells. Finally, we illustrate diverse downstream applications of this technique including in vitro high-throughput chemotherapeutic screens, in situ immune cell characterization, and in vivo patient-derived xenografts. Thus, routine clinical FNA-based collection techniques represent an unappreciated substantial source of material that can be exploited to generate tumor organoids from a variety of tumor types for both discovery and clinical applications.