Oncolytic virotherapy induced CSDE1 neo-antigenesis restricts VSV replication but can be targeted by immunotherapy
Timothy Kottke, Jason M. Tonne, Laura Evgin, Christopher B. Driscoll, Jacob P. van Vloten, Victoria A. Jennings, Amanda L. Huff, Brady N. Zell, Jill Thompson, Phonphimon Wongthida, José S. Pulido, Matthew Schuelke, Adel Samson, Peter J. Selby, Elizabeth J. Ilett, Mark A. McNiven, Lewis R. Roberts, Mitesh J. Borad, Hardev Pandha, Kevin J. Harrington, Alan Melcher, Richard G. Vile
Abstract
Abstract In our clinical trials of oncolytic vesicular stomatitis virus expressing interferon beta (VSV-IFNβ), several patients achieved initial responses followed by aggressive relapse. We show here that VSV-IFNβ-escape tumors predictably express a point-mutated CSDE1 P5S form of the RNA-binding Cold Shock Domain-containing E1 protein, which promotes escape as an inhibitor of VSV replication by disrupting viral transcription. Given time, VSV-IFNβ evolves a compensatory mutation in the P / M Inter-Genic Region which rescues replication in CSDE1 P5S cells. These data show that CSDE1 is a major cellular co-factor for VSV replication. However, CSDE1 P5S also generates a neo-epitope recognized by non-tolerized T cells. We exploit this predictable neo-antigenesis to drive, and trap, tumors into an escape phenotype, which can be ambushed by vaccination against CSDE1 P5S , preventing tumor escape. Combining frontline therapy with escape-targeting immunotherapy will be applicable across multiple therapies which drive tumor mutation/evolution and simultaneously generate novel, targetable immunopeptidomes associated with acquired treatment resistance.