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A cloud platform for atomic pair distribution function analysis: <i>PDFitc</i>

Long Yang, Elizabeth Culbertson, Nancy K. Thomas, Hung Vuong, Emil T. S. Kjær, Kirsten M. Ø. Jensen, Matthew G. Tucker, Simon J. L. Billinge

2020Acta Crystallographica Section A Foundations and Advances32 citationsDOIOpen Access PDF

Abstract

A cloud web platform for analysis and interpretation of atomic pair distribution function (PDF) data (PDFitc) is described. The platform is able to host applications for PDF analysis to help researchers study the local and nanoscale structure of nanostructured materials. The applications are designed to be powerful and easy to use and can, and will, be extended over time through community adoption and development. The currently available PDF analysis applications, structureMining, spacegroupMining and similarityMapping, are described. In the first and second the user uploads a single PDF and the application returns a list of best-fit candidate structures, and the most likely space group of the underlying structure, respectively. In the third, the user can upload a set of measured or calculated PDFs and the application returns a matrix of Pearson correlations, allowing assessment of the similarity between different data sets. structureMining is presented here as an example to show the easy-to-use workflow on PDFitc. In the future, as well as using the PDFitc applications for data analysis, it is hoped that the community will contribute their own codes and software to the platform.

Topics & Concepts

UploadComputer scienceCloud computingWorkflowData miningSet (abstract data type)Data setFunction (biology)Data scienceDatabaseWorld Wide WebOperating systemArtificial intelligenceEvolutionary biologyBiologyProgramming languageX-ray Diffraction in CrystallographyMetal-Organic Frameworks: Synthesis and ApplicationsCrystal Structures and Properties