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CD-CODE: crowdsourcing condensate database and encyclopedia

Nadia Rostam, Soumyadeep Ghosh, Chi Fung Willis Chow, Anna Hadarovich, Cedric Landerer, Rajat Ghosh, HongKee Moon, Lena Hersemann, Diana M. Mitrea, Isaac A. Klein, Anthony A. Hyman, Ágnes Tóth-Petróczy

2023Nature Methods71 citationsDOIOpen Access PDF

Abstract

The discovery of biomolecular condensates transformed our understanding of intracellular compartmentalization of molecules. To integrate interdisciplinary scientific knowledge about the function and composition of biomolecular condensates, we developed the crowdsourcing condensate database and encyclopedia ( cd-code.org ). CD-CODE is a community-editable platform, which includes a database of biomolecular condensates based on the literature, an encyclopedia of relevant scientific terms and a crowdsourcing web application. Our platform will accelerate the discovery and validation of biomolecular condensates, and facilitate efforts to understand their role in disease and as therapeutic targets.

Topics & Concepts

CrowdsourcingEncyclopediaCompartmentalization (fire protection)Computer scienceData scienceCode (set theory)World Wide WebComputational biologyDatabaseChemistryBiologyProgramming languageLibrary scienceEnzymeBiochemistrySet (abstract data type)RNA Research and SplicingRNA and protein synthesis mechanismsRNA modifications and cancer
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