Litcius/Paper detail

Incorporating Neural Networks into the AMOEBA Polarizable Force Field

Yanxing Wang, Théo Jaffrelot Inizan, Chengwen Liu, Jean‐Philip Piquemal, Pengyu Ren

2024The Journal of Physical Chemistry B11 citationsDOIOpen Access PDF

Abstract

Neural network potentials (NNPs) offer significant promise to bridge the gap between the accuracy of quantum mechanics and the efficiency of molecular mechanics in molecular simulation. Most NNPs rely on the locality assumption that ensures the model's transferability and scalability and thus lack the treatment of long-range interactions, which are essential for molecular systems in the condensed phase. Here we present an integrated hybrid model, AMOEBA+NN, which combines the AMOEBA potential for the short- and long-range noncovalent atomic interactions and an NNP to capture the remaining local covalent contributions. The AMOEBA+NN model was trained on the conformational energy of the ANI-1x data set and tested on several external data sets ranging from small molecules to tetrapeptides. The hybrid model demonstrated substantial improvements over the baseline models in term of accuracy as the molecule size increased, suggesting its potential as a next-generation approach for chemically accurate molecular simulations.

Topics & Concepts

ScalabilityLocalityForce field (fiction)Statistical physicsArtificial neural networkTransferabilityComputer scienceRangingRange (aeronautics)Amoeba (genus)Biological systemComputational chemistryPhysicsChemistryArtificial intelligenceMachine learningMaterials scienceBiologyPhilosophyMicrobiologyLinguisticsLogitTelecommunicationsDatabaseComposite materialMachine Learning in Materials ScienceProtein Structure and DynamicsComputational Drug Discovery Methods
Incorporating Neural Networks into the AMOEBA Polarizable Force Field | Litcius