Litcius/Paper detail

Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets

Jasmine Plummer, Felipe Segato Dezem, David P. Cook, Jiwoon Park, Luke Zhang, Yutian Liu, Maycon Marção, Hannah DuBose, Wani Arjumand, Kellie Wise, Michael J. Roach, Kate Harvey, Taopeng Wang, Kirk B. Jensen, Natalia S. Morosini, Roberto De Gregorio, Alicia Alonso, Shauna L Houlihan, Robert E. Schwartz, Erika Hissong, Catherine Snopkowski, Jeffrey L. Wrana, Natalie K. Ryan, Lisa M. Butler, George Church, Alexander Swarbrick, Christopher E. Mason, Luciano G. Martelotto

2025Nature Biotechnology17 citationsDOI

Topics & Concepts

Computer scienceData miningSpatial analysisAnnotationImputation (statistics)Data collectionReproducibilityData typeSpatial ecologyInformation retrievalStandardizationTranscriptomeVisualizationSingle-cell and spatial transcriptomicsCell Image Analysis TechniquesGene expression and cancer classification