Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets
Jasmine Plummer, Felipe Segato Dezem, David P. Cook, Jiwoon Park, Luke Zhang, Yutian Liu, Maycon Marção, Hannah DuBose, Wani Arjumand, Kellie Wise, Michael J. Roach, Kate Harvey, Taopeng Wang, Kirk B. Jensen, Natalia S. Morosini, Roberto De Gregorio, Alicia Alonso, Shauna L Houlihan, Robert E. Schwartz, Erika Hissong, Catherine Snopkowski, Jeffrey L. Wrana, Natalie K. Ryan, Lisa M. Butler, George Church, Alexander Swarbrick, Christopher E. Mason, Luciano G. Martelotto
Topics & Concepts
Computer scienceData miningSpatial analysisAnnotationImputation (statistics)Data collectionReproducibilityData typeSpatial ecologyInformation retrievalStandardizationTranscriptomeVisualizationSingle-cell and spatial transcriptomicsCell Image Analysis TechniquesGene expression and cancer classification