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Repeated global adaptation across plant species

Gabriele Nocchi, James R. Whiting, Sam Yeaman

2024Proceedings of the National Academy of Sciences18 citationsDOIOpen Access PDF

Abstract

Global adaptation occurs when all populations of a species undergo selection toward a common optimum. This can occur by a hard selective sweep with the emergence of a new globally advantageous allele that spreads throughout a species' natural range until reaching fixation. This evolutionary process leaves a temporary trace in the region affected, which is detectable using population genomic methods. While selective sweeps have been identified in many species, there have been few comparative and systematic studies of the genes involved in global adaptation. Building upon recent findings showing repeated genetic basis of local adaptation across independent populations and species, we asked whether certain genes play a more significant role in driving global adaptation across plant species. To address this question, we scanned the genomes of 17 plant species to identify signals of repeated global selective sweeps. Despite the substantial evolutionary distance between the species analyzed, we identified several gene families with strong evidence of repeated positive selection. These gene families tend to be enriched for reduced pleiotropy, consistent with predictions from Fisher's evolutionary model and the cost of complexity hypothesis. We also found that genes with repeated sweeps exhibit elevated levels of gene duplication. Our findings contrast with recent observations of increased pleiotropy in genes driving local adaptation, consistent with predictions based on the theory of migration-selection balance.

Topics & Concepts

BiologyLocal adaptationEvolutionary biologyAdaptation (eye)PleiotropyNatural selectionFixation (population genetics)Selective sweepGeneSelection (genetic algorithm)PopulationGeneticsGene duplicationAllelePhenotypeNeuroscienceHaplotypeArtificial intelligenceDemographyComputer scienceSociologyGenetic diversity and population structureEvolution and Genetic DynamicsPlant and animal studies
Repeated global adaptation across plant species | Litcius