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Systematic Organization of COVID-19 Data Supported by the Adverse Outcome Pathway Framework

Penny Nymark, Magdalini Sachana, Sofia Batista Leite, Jukka Sund, Catharine E. Krebs, Kristie Sullivan, Stephen W. Edwards, Laura Viviani, Catherine Willett, Brigitte Landesmann, Clemens Wittwehr

2021Frontiers in Public Health30 citationsDOIOpen Access PDF

Abstract

Adverse Outcome Pathways (AOP) provide structured frameworks for the systematic organization of research data and knowledge. The AOP framework follows a set of key principles that allow for broad application across diverse disciplines related to human health, including toxicology, pharmacology, virology and medical research. The COVID-19 pandemic engages a great number of scientists world-wide and data is increasing with exponential speed. Diligent data management strategies are employed but approaches for systematically organizing the data-derived information and knowledge are lacking. We believe AOPs can play an important role in improving interpretation and efficient application of scientific understanding of COVID-19. Here, we outline a newly initiated effort, the CIAO project (https://www.ciao-covid.net/), to streamline collaboration between scientists across the world toward development of AOPs for COVID-19, and describe the overarching aims of the effort, as well as the expected outcomes and research support that they will provide.

Topics & Concepts

Adverse Outcome PathwayCoronavirus disease 2019 (COVID-19)Data scienceComputer scienceSet (abstract data type)Outcome (game theory)Pandemic2019-20 coronavirus outbreakSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Data managementKnowledge managementManagement scienceMedicineData miningComputational biologyBiologyMathematical economicsProgramming languagePathologyInfectious disease (medical specialty)VirologyMathematicsDiseaseOutbreakEconomicsPharmacovigilance and Adverse Drug ReactionsHealth Systems, Economic Evaluations, Quality of LifeEthics in Clinical Research