Engineering and evolution of Yarrowia lipolytica for producing lipids from lignocellulosic hydrolysates
Sangdo Yook, Anshu Deewan, Leah Ziolkowski, Stephan Lane, Payman Tohidifar, Ming‐Hsun Cheng, Vijay Pratap Singh, Matthew J. Stasiewicz, Christopher V. Rao, Yong‐Su Jin
Abstract
• Yarrowia lipolytica was engineered and evolved for improved xylose assimilation. • The resulting Y. lipolytica efficiently converted xylose into lipids. • Genetic variations eliciting enhanced xylose assimilation were identified. • Sorghum hydrolysate was efficiently converted into lipids by engineered Y. lipolytica . Yarrowia lipolytica , an oleaginous yeast, shows promise for industrial fermentation due to its robust acetyl-CoA flux and well-developed genetic engineering tools. However, its lack of an active xylose metabolism restricts the conversion of cellulosic sugars to valuable products. To address this, metabolic engineering, and adaptive laboratory evolution (ALE) were applied to the Y. lipolytica PO1f strain, resulting in an efficient xylose-assimilating strain (XEV). Whole-genome sequencing (WGS) of the XEV followed by reverse engineering revealed that the amplification of the heterologous oxidoreductase pathway and a mutation in the GTPase-activating protein gene (YALI0B12100g) might be the primary reasons for improved xylose assimilation in the XEV strain. When a sorghum hydrolysate was used, the XEV strain showed superior xylose consumption and lipid production compared to its parental strain (X123). This study advances our understanding of xylose metabolism in Y. lipolytica and proposes effective metabolic engineering strategies for optimizing lignocellulosic hydrolysates.