Brain Regional Differences in Hexanucleotide Repeat Length in X-Linked Dystonia-Parkinsonism Using Nanopore Sequencing
Charles Jourdan Reyes, Björn‐Hergen Laabs, Susen Schaake, Theresa Lüth, Raphaela Ardicoglu, Aleksandar Raković, Karen Grütz, Daniel Alvarez‐Fischer, Roland Dominic G. Jamora, Raymond L. Rosales, Imke Weyers, Inke R. König, Norbert Brüggemann, Christine Klein, Valerija Dobričić, Ana Westenberger, Joanne Trinh
Abstract
<h3>Objective</h3> Our study investigated the presence of regional differences in hexanucleotide repeat number in postmortem brain tissues of 2 patients with X-linked dystonia-parkinsonism (XDP), a combined dystonia-parkinsonism syndrome modified by a (CCCTCT)<sub>n</sub> repeat within the causal SINE-VNTR-<i>Alu</i> retrotransposon insertion in the <i>TAF1</i> gene. <h3>Methods</h3> Genomic DNA was extracted from blood and postmortem brain samples, including the basal ganglia and cortex from both patients and from the cerebellum, midbrain, and pituitary gland from 1 patient. Repeat sizing was performed using fragment analysis, small-pool PCR-based Southern blotting, and Oxford nanopore sequencing. <h3>Results</h3> The basal ganglia (<i>p</i> < 0.001) and cerebellum (<i>p</i> < 0.001) showed higher median repeat numbers and higher degrees of repeat instability compared with blood. <h3>Conclusions</h3> Somatic repeat instability may predominate in brain regions selectively affected in XDP, thereby hinting at its potential role in disease manifestation and modification.