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SARS-CoV-2 Variants: Genetic Insights, Epidemiological Tracking, and Implications for Vaccine Strategies

Fatimah S. Alhamlan, Ahmed A. Al‐Qahtani

2025International Journal of Molecular Sciences34 citationsDOIOpen Access PDF

Abstract

The emergence of SARS-CoV-2 variants has significantly impacted the global response to the COVID-19 pandemic. This review examines the genetic diversity of SARS-CoV-2 variants, their roles in epidemiological tracking, and their influence on viral fitness. Variants of concern (VOCs) such as Alpha, Beta, Gamma, Delta, and Omicron have demonstrated increased transmissibility, altered pathogenicity, and potential resistance to neutralizing antibodies. Epidemiological tracking of these variants is crucial for understanding their spread, informing public health interventions, and guiding vaccine development. The review also explores how specific mutations in the spike protein and other genomic regions contribute to viral fitness, affecting replication efficiency, immune escape, and transmission dynamics. By integrating genomic surveillance data with epidemiological and clinical findings, this review provides a comprehensive overview of the ongoing evolution of SARS-CoV-2 and its implications for public health strategies and new vaccine development.

Topics & Concepts

BiologyEpidemiologyPandemicPublic healthGenomicsGeneticsVirologySevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Computational biologyEvolutionary biologyGenomeCoronavirus disease 2019 (COVID-19)DiseaseGeneMedicineInfectious disease (medical specialty)PathologyNursingInternal medicineSARS-CoV-2 and COVID-19 ResearchViral gastroenteritis research and epidemiologySARS-CoV-2 detection and testing
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