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<scp>r/K</scp> selection of <scp>GC</scp> content in prokaryotes

Lucio Aliperti, Ariel A. Aptekmann, Gonzalo Farfañuk, Luciana Couso, Alfonso Soler‐Bistué, Ignacio E. Sánchez

2023Environmental Microbiology18 citationsDOIOpen Access PDF

Abstract

The guanine/cytosine (GC) content of prokaryotic genomes is species-specific, taking values from 16% to 77%. This diversity of selection for GC content remains contentious. We analyse the correlations between GC content and a range of phenotypic and genotypic data in thousands of prokaryotes. GC content integrates well with these traits into r/K selection theory when phenotypic plasticity is considered. High GC-content prokaryotes are r-strategists with cheaper descendants thanks to a lower average amino acid metabolic cost, colonize unstable environments thanks to flagella and a bacillus form and are generalists in terms of resource opportunism and their defence mechanisms. Low GC content prokaryotes are K-strategists specialized for stable environments that maintain homeostasis via a high-cost outer cell membrane and endospore formation as a response to nutrient deprivation, and attain a higher nutrient-to-biomass yield. The lower proteome cost of high GC content prokaryotes is driven by the association between GC-rich codons and cheaper amino acids in the genetic code, while the correlation between GC content and genome size may be partly due to functional diversity driven by r/K selection. In all, molecular diversity in the GC content of prokaryotes may be a consequence of ecological r/K selection.

Topics & Concepts

BiologySelection (genetic algorithm)Food scienceComputational biologyMicrobiologyComputer scienceArtificial intelligenceRNA and protein synthesis mechanismsGenomics and Phylogenetic StudiesBacterial Genetics and Biotechnology