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Direct control of lysosomal catabolic activity by mTORC1 through regulation of V-ATPase assembly

Edoardo Ratto, Subhankar Chowdhury, Nora Siefert, Martin Schneider, Marten Wittmann, Dominic Helm, Wilhelm Palm

2022Nature Communications162 citationsDOIOpen Access PDF

Abstract

Abstract Mammalian cells can acquire exogenous amino acids through endocytosis and lysosomal catabolism of extracellular proteins. In amino acid-replete environments, nutritional utilization of extracellular proteins is suppressed by the amino acid sensor mechanistic target of rapamycin complex 1 (mTORC1) through an unknown process. Here, we show that mTORC1 blocks lysosomal degradation of extracellular proteins by suppressing V-ATPase-mediated acidification of lysosomes. When mTORC1 is active, peripheral V-ATPase V 1 domains reside in the cytosol where they are stabilized by association with the chaperonin TRiC. Consequently, most lysosomes display low catabolic activity. When mTORC1 activity declines, V-ATPase V 1 domains move to membrane-integral V-ATPase V o domains at lysosomes to assemble active proton pumps. The resulting drop in luminal pH increases protease activity and degradation of protein contents throughout the lysosomal population. These results uncover a principle by which cells rapidly respond to changes in their nutrient environment by mobilizing the latent catabolic capacity of lysosomes.

Topics & Concepts

mTORC1CatabolismLysosomeCell biologyExtracellularBiochemistryV-ATPaseEndocytosisCytosolATPaseAmino acidBiologyProteasomeChemistryMetabolismEnzymePhosphorylationCellProtein kinase BATP Synthase and ATPases ResearchCellular transport and secretionMitochondrial Function and Pathology