An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing
Devon Kohler, Mateusz Staniak, Fengchao Yu, Alexey I. Nesvizhskii, Olga Vitek
Topics & Concepts
Mass spectrometryWorkflowProteomicsComputational biologyScale (ratio)Data acquisitionComputer scienceMass spectrometry imagingChemistryChromatographyBiologyBiochemistryPhysicsDatabaseOperating systemQuantum mechanicsGeneMass Spectrometry Techniques and ApplicationsAdvanced Proteomics Techniques and ApplicationsMetabolomics and Mass Spectrometry Studies