Machine Learning-Enabled Genome Mining and Bioactivity Prediction of Natural Products
Yujie Yuan, Chengyou Shi, Huimin Zhao
Abstract
Natural products (NPs) produced by microorganisms and plants are a major source of drugs, herbicides, and fungicides. Thanks to recent advances in DNA sequencing, bioinformatics, and genome mining tools, a vast amount of data on NP biosynthesis has been generated over the years, which has been increasingly exploited to develop machine learning (ML) tools for NP discovery. In this review, we discuss the latest advances in developing and applying ML tools for exploring the potential NPs that can be encoded by genomic language and predicting the types of bioactivities of NPs. We also examine the technical challenges associated with the development and application of ML tools for NP research.
Topics & Concepts
GenomeComputational biologyComputer scienceData scienceBiologyGeneGeneticsMicrobial Natural Products and BiosynthesisPlant biochemistry and biosynthesisMicrobial Metabolism and Applications