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Packing and Conformational Polymorphism in 1,2-Bis(aminocarbonyl(1-<i>tert</i>-butyl-1<i>H</i>-pyrazol-(3)5-yl))ethanes: Illuminating Examples of Highly Flexible Molecules

Geórgia C. Zimmer, Anderson B. Pagliari, Vanessa B. Solner, Manfredo Hörner, Hélio G. Bonacorso, Nilo Zanatta, Marcos A. P. Martins

2021Crystal Growth & Design13 citationsDOI

Abstract

Insights into the occurrence of packing and conformational polymorphs and anhydrous/hydrate forms of 1,2-bis(aminocarbonyl(1-tert-butyl-1H-pyrazol-[3]5-yl))ethanes with the substituents R = Me (a), F-4-Ph (b), Cl-4-Ph (c), and Br-4-Ph (d) in positions 5 (1) and 3 (2) of the pyrazole rings are presented. In this series, two molecular forms were observed, linear and folded. Compound 1a revealed an illuminating and rare example of a highly flexible molecule with packing polymorphism. The molecular stacking and absence of NH···O═C interactions promoted polymorph growth. Structure 2a showed chains driven by NH···O═C bonds in the anhydrous form and closed dimers by water binding the molecules (NHamide···OHwt···C═Oamide) in the hydrate form. Two different forms were observed for conformational polymorph 2d (linear and folded). The folded form was about −10 kcal mol–1 more stable than the linear form, showing significant crystalline packing differences. This occurrence is attributed to the rotation of the amide groups through the NH···O═C bonds. The linear shape showed a higher stabilization energy for NH···O═C bonds and a cluster −6 kcal mol–1 more stable than polymorph 2dI. Compounds 1b–d and 2b-c also had their crystal growth proposed and features highlighted.

Topics & Concepts

ChemistryAnhydrousMoleculeCrystallographyPyrazoleAmideHydrateStackingPolymorphism (computer science)Crystal structureStereochemistryOrganic chemistryGeneGenotypeBiochemistryCrystal structures of chemical compoundsCrystallography and molecular interactionsChemical Synthesis and Analysis
Packing and Conformational Polymorphism in 1,2-Bis(aminocarbonyl(1-<i>tert</i>-butyl-1<i>H</i>-pyrazol-(3)5-yl))ethanes: Illuminating Examples of Highly Flexible Molecules | Litcius