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Cytoscape.js 2023 update: a graph theory library for visualization and analysis

Max Franz, Christian Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper, Gerardo Huck, Dong Yue, Onur Sumer, Gary D. Bader

2023Bioinformatics165 citationsDOIOpen Access PDF

Abstract

SUMMARY: Cytoscape.js is an open-source JavaScript-based graph library. Its most common use case is as a visualization software component, so it can be used to render interactive graphs in a web browser. It also can be used in a headless manner, useful for graph operations on a server, such as Node.js. This update describes new features and enhancements introduced over many new versions from 2015 to 2022. AVAILABILITY AND IMPLEMENTATION: Cytoscape.js is implemented in JavaScript. Documentation, downloads and source code are available at http://js.cytoscape.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

Topics & Concepts

Computer scienceJavaScriptVisualizationDocumentationSource codeGraphSoftwareGraph drawingWeb applicationProgramming languageWorld Wide WebInformation retrievalData miningTheoretical computer scienceBioinformatics and Genomic NetworksData Visualization and AnalyticsGraph Theory and Algorithms
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