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Isolation of PD‐L1 Extracellular Vesicle Subpopulations Using DNA Computation Mediated Microfluidic Tandem Separation

Yinzhu Lu, Bingqian Lin, Weizhi Liu, Jialü Zhang, Lin Zhu, Chaoyong Yang, Yanling Song

2023Small Methods30 citationsDOI

Abstract

Accurate isolation of targeted extracellular vesicle (EV) is challenging due to the antigenic heterogeneity of EV subpopulations which are from different cell origins. Most EV subpopulations lack a single marker whose expression cleanly distinguishes them from mixed populations of closely related EVs. Here, a modular platform capable of taking multiple binding events as input, performing logic computations, and producing two independent outputs for tandem microchips for EV subpopulation isolation, is developed. Taking advantages of the excellent selectivity of dual-aptamer recognition and the sensitivity of tandem microchips, this method achieves, for the first time, sequential isolation of tumor PD-L1 EVs and non-tumor PD-L1 EVs. As a result, the developed platform can not only effectively distinguish cancer patients from healthy donors but also provides new clues for assessing immune heterogeneity. Moreover, the captured EVs can be released through a DNA hydrolysis reaction with high efficiency, which is compatible with downstream mass spectrometry for EV proteome profiling. Overall, this strategy is expected to isolate different EV subpopulations, translate EVs into reliable clinical biomarkers, and accurately investigate the biological functions of different EV subsets.

Topics & Concepts

Extracellular vesiclesComputational biologyExtracellular vesicleTandemProteomeAptamerDNAModular designBiologyTandem mass spectrometryChemistryMicrovesiclesComputer scienceCell biologyMolecular biologyMass spectrometryBioinformaticsGeneticsGeneMaterials scienceChromatographymicroRNAOperating systemComposite materialExtracellular vesicles in diseaseAdvanced biosensing and bioanalysis techniquesNanoplatforms for cancer theranostics
Isolation of PD‐L1 Extracellular Vesicle Subpopulations Using DNA Computation Mediated Microfluidic Tandem Separation | Litcius