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High-throughput detection of T-DNA insertion sites for multiple transgenes in complex genomes

Brianne Edwards, Eli D. Hornstein, Nathan J. Wilson, Heike Sederoff

2022BMC Genomics14 citationsDOIOpen Access PDF

Abstract

BACKGROUND: Genetic engineering of crop plants has been successful in transferring traits into elite lines beyond what can be achieved with breeding techniques. Introduction of transgenes originating from other species has conferred resistance to biotic and abiotic stresses, increased efficiency, and modified developmental programs. The next challenge is now to combine multiple transgenes into elite varieties via gene stacking to combine traits. Generating stable homozygous lines with multiple transgenes requires selection of segregating generations which is time consuming and labor intensive, especially if the crop is polyploid. Insertion site effects and transgene copy number are important metrics for commercialization and trait efficiency. RESULTS: generation of any crop transformed via Agrobacterium. We present an example using the allohexaploid oil-seed plant Camelina sativa to determine insertion site location of two transgenes. CONCLUSION: This new methodology enables the early selection of desirable transgene location and copy number to generate homozygous lines within two generations.

Topics & Concepts

BiologyGenomeDNA microarrayGeneticsComputational biologyThroughputDNATransgeneDNA sequencingGeneComputer scienceGene expressionWirelessTelecommunicationsLipid metabolism and biosynthesisPlant tissue culture and regenerationChromosomal and Genetic Variations
High-throughput detection of T-DNA insertion sites for multiple transgenes in complex genomes | Litcius