Fast deep learning reconstruction techniques for preclinical magnetic resonance fingerprinting
Raffaella Fiamma Cabini, Leonardo Barzaghi, Davide Cicolari, Paolo Arosio, Stefano Carrazza, Silvia Figini, Marta Filibian, Andrea Gazzano, Rolf Krause, Manuel Mariani, Marco Peviani, Anna Pichiecchio, Diego Ulisse Pizzagalli, A. Lascialfari
Abstract
Abstract We propose a deep learning (DL) model and a hyperparameter optimization strategy to reconstruct T 1 and T 2 maps acquired with the magnetic resonance fingerprinting (MRF) methodology. We applied two different MRF sequence routines to acquire images of ex vivo rat brain phantoms using a 7‐T preclinical scanner. Subsequently, the DL model was trained using experimental data, completely excluding the use of any theoretical MRI signal simulator. The best combination of the DL parameters was implemented by an automatic hyperparameter optimization strategy, whose key aspect is to include all the parameters to the fit, allowing the simultaneous optimization of the neural network architecture, the structure of the DL model, and the supervised learning algorithm. By comparing the reconstruction performances of the DL technique with those achieved from the traditional dictionary‐based method on an independent dataset, the DL approach was shown to reduce the mean percentage relative error by a factor of 3 for T 1 and by a factor of 2 for T 2 , and to improve the computational time by at least a factor of 37. Furthermore, the proposed DL method enables maintaining comparable reconstruction performance, even with a lower number of MRF images and a reduced k‐space sampling percentage, with respect to the dictionary‐based method. Our results suggest that the proposed DL methodology may offer an improvement in reconstruction accuracy, as well as speeding up MRF for preclinical, and in prospective clinical, investigations.