Mitogenomic phylogeny of the Asian colobine genus <i>Trachypithecus</i> with special focus on <i>Trachypithecus phayrei</i> (Blyth, 1847) and description of a new species
Christian Roos, Kristofer M. Helgen, Roberto Portela Miguez, Naw May Lay Thant, Ngwe Lwin, Aung Ko Lin, Aung Lin, Khin Mar Yi, Paing Soe, Zin Mar Hein, Margaret Nyein Nyein Myint, Tanvir Ahmed, Dilip Chetry, Melina Urh, E. Grace Veatch, Neil Duncan, Pepijn Kamminga, Marcus A.H. Chua, Yao Lu, Christian Matauschek, Dirk Meyer, Zhijin Liu, Ming Li, Tilo Nadler, Pengfei Fan, Le Khac Quyet, Michael Hofreiter, Dietmar Zinner, Frank Momberg, Chances for Nature (CfN), Goettingen 37073, Germany, Wildlife Conservation Society (WCS) - Myanmar Program, Yangon 11041, Myanmar, Fauna & Flora International (FFI) - Myanmar Programme, Yangon 11201, Myanmar, World Wide Fund for Nature (WWF) - Myanmar, Yangon 11191, Myanmar, Cuc Phuong Commune, Nho Quan District, Ninh Binh Province, Vietnam, Leibniz Science Campus Primate Cognition, Goettingen 37077, Germany, Fauna & Flora International (FFI) – Asia-Pacific Programme, Yangon 11201, Myanmar, Chances for Nature (CfN), Goettingen 37073, Germany, Wildlife Conservation Society (WCS) - Myanmar Program, Yangon 11041, Myanmar, Fauna & Flora International (FFI) - Myanmar Programme, Yangon 11201, Myanmar, World Wide Fund for Nature (WWF) - Myanmar, Yangon 11191, Myanmar, Cuc Phuong Commune, Nho Quan District, Ninh Binh Province, Vietnam, Leibniz Science Campus Primate Cognition, Goettingen 37077, Germany, Fauna & Flora International (FFI) – Asia-Pacific Programme, Yangon 11201, Myanmar
Abstract
<i>Trachypithecus</i>, which currently contains 20 species divided into four groups, is the most speciose and geographically dispersed genus among Asian colobines. Despite several morphological and molecular studies, however, its evolutionary history and phylogeography remain poorly understood. Phayre’s langur (<i>Trachypithecus phayrei</i>) is one of the most widespread members of the genus, but details on its actual distribution and intraspecific taxonomy are limited and controversial. Thus, to elucidate the evolutionary history of <i>Trachypithecus</i> and to clarify the intraspecific taxonomy and distribution of <i>T. phayrei</i>, we sequenced 41 mitochondrial genomes from georeferenced fecal samples and museum specimens, including two holotypes. Phylogenetic analyses revealed a robustly supported phylogeny of <i>Trachypithecus</i>, suggesting that the <i>T. pileatus</i> group branched first, followed by the <i>T. francoisi</i> group, and the <i>T. cristatus</i> and <i>T. obscurus</i> groups most recently. The four species groups diverged from each other 4.5–3.1 million years ago (Ma), while speciation events within these groups occurred much more recently (1.6–0.3 Ma). Within <i>T. phayrei</i>, we found three clades that diverged 1.0–0.9 Ma, indicating the existence of three rather than two taxa. Following the phylogenetic species concept and based on genetic, morphological, and ecological differences, we elevate the <i>T. phayrei</i> subspecies to species level, describe a new species from central Myanmar, and refine the distribution of the three taxa. Overall, our study highlights the importance of museum specimens and provides new insights not only into the evolutionary history of <i>T. phayrei</i> but the entire <i>Trachypithecus</i> genus as well.