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Systematic Codes Correcting Multiple-Deletion and Multiple-Substitution Errors

Wentu Song, Nikita Polyanskii, Kui Cai, Xuan He

2022IEEE Transactions on Information Theory26 citationsDOI

Abstract

We consider construction of deletion and substitution correcting codes with low redundancy and efficient encoding/ decoding. First, by simplifying the method of Sima <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">et al</i> . (ISIT 2020), we construct a family of binary single-deletion <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s$ </tex-math></inline-formula> -substitution correcting codes with redundancy <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$(s+1) (2s+1)\log _{2} n+o(\log _{2} n)$ </tex-math></inline-formula> and encoding complexity <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$O(n^{2})$ </tex-math></inline-formula> , where <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$n$ </tex-math></inline-formula> is the blocklength of the code and <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s\geq 1$ </tex-math></inline-formula> . The construction can be viewed as a generalization of Smagloy <italic xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">et al</i> .’s construction (ISIT 2020), and for the special case of <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s=1$ </tex-math></inline-formula> , our construction is a slight improvement in redundancy of the existing works. Further, we modify the syndrome compression technique by combining a precoding process and construct a family of systematic <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$t$ </tex-math></inline-formula> -deletion <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s$ </tex-math></inline-formula> -substitution correcting codes with polynomial time encoding/decoding algorithms for both binary and nonbinary alphabets, where <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$t\geq 1$ </tex-math></inline-formula> and <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s\geq 1$ </tex-math></inline-formula> . Specifically, our binary <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$t$ </tex-math></inline-formula> -deletion <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s$ </tex-math></inline-formula> -substitution correcting codes of length <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$n$ </tex-math></inline-formula> have redundancy <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$(4t+3s)\log _{2}n+o(\log _{2}n)$ </tex-math></inline-formula> , whereas, for <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$q$ </tex-math></inline-formula> being a prime power, the redundancy of <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$q$ </tex-math></inline-formula> -ary <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$t$ </tex-math></inline-formula> -deletion <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s$ </tex-math></inline-formula> -substitution codes is asymptotically <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$\left({4t+4s-1-\lfloor \frac {2s-1}{q}\rfloor }\right)\vphantom {{\lfloor \frac {2s-1}{q}\rfloor }_{j}}\log _{q} n + o(\log _{q}n)$ </tex-math></inline-formula> as <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$n\to \infty $ </tex-math></inline-formula> . We also construct a family of binary systematic <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$t$ </tex-math></inline-formula> -deletion correcting codes (i.e., <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$s=0$ </tex-math></inline-formula> ) with redundancy <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$(4t-1)\log _{2} n+o(\log _{2} n)$ </tex-math></inline-formula> . The proposed constructions improve upon the redundancy of the state-of-the-art constructions.

Topics & Concepts

Substitution (logic)Computer scienceAlgorithmTheoretical computer scienceMathematicsProgramming languageDNA and Biological ComputingAlgorithms and Data CompressionFractal and DNA sequence analysis
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