DeepLoop robustly maps chromatin interactions from sparse allele-resolved or single-cell Hi-C data at kilobase resolution
Shanshan Zhang, Dylan Plummer, Leina Lu, Jian Cui, Wanying Xu, Miao Wang, Xiaoxiao Liu, Nachiketh Prabhakar, Jatin Shrinet, Divyaa Srinivasan, Peter Fraser, Yan Li, Jing Li, Fulai Jin
Topics & Concepts
BiologyChromatinGeneticsChromosome conformation captureLocus (genetics)Micrococcal nucleaseSingle-nucleotide polymorphismAlleleComputational biologyCTCFEnhancerDNAGeneNucleosomeTranscription factorGenotypeGenomics and Chromatin DynamicsEpigenetics and DNA MethylationGenetic Syndromes and Imprinting