Deep learning for the PSIPRED Protein Analysis Workbench
Daniel Buchan, Lewis Moffat, Andy M. Lau, Shaun M. Kandathil, David Jones
Abstract
The PSIRED Workbench is a long established and popular bioinformatics web service offering a wide range of machine learning based analyses for characterizing protein structure and function. In this paper we provide an update of the recent additions and developments to the webserver, with a focus on new Deep Learning based methods. We briefly discuss some trends in server usage since the publication of AlphaFold2 and we give an overview of some upcoming developments for the service. The PSIPRED Workbench is available at http://bioinf.cs.ucl.ac.uk/psipred.
Topics & Concepts
WorkbenchBiologyWeb serverFocus (optics)Function (biology)ServerDeep learningService (business)Web serviceWorld Wide WebBioinformaticsComputer scienceComputational biologyThe InternetArtificial intelligenceVisualizationGeneticsEconomyPhysicsEconomicsOpticsProtein Structure and DynamicsMachine Learning in BioinformaticsAdvanced Proteomics Techniques and Applications